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CompetitiveDegradationReaction.cpp

Go to the documentation of this file.

// CompetitiveDegradationReaction.cpp: implementation of the CompetitiveDegradationReaction class.
//

#ifdef _WINDOWS
#include "stdafx.h"
#endif

#include "CompetitiveDegradationReaction.h"

// Construction/Destruction

CompetitiveDegradationReaction::CompetitiveDegradationReaction(Chemical *phosphorylatedprotein, Chemical *competitivebinder, 
                                                                                                 RateConstant *kphx, RateConstant *Km, std::string CompetitiveDegradationReaction)
{
        int numChemicals = 0;

        chemicals.push_back(phosphorylatedprotein);
        this->phosphorylatedprotein = numChemicals;     // Number in private array
        numChemicals++;
        numberOfEachChemicalChangedByReaction.push_back(-1);

        chemicals.push_back(competitivebinder);
        this->competitivebinder = numChemicals;
        numChemicals++;
        numberOfEachChemicalChangedByReaction.push_back(0);

        int numRateConstants = 0;

        rateConstants.push_back(kphx);
        this->kphx = numRateConstants;
        numRateConstants++;

        rateConstants.push_back(Km);
        this->Km = numRateConstants;
        numRateConstants++;

        this->SetTeXForm();
}

CompetitiveDegradationReaction::~CompetitiveDegradationReaction()
{

}


double CompetitiveDegradationReaction::GetRate() const
{
        return rateConstants[kphx]->GetValue() * chemicals[phosphorylatedprotein]->GetAmount()/( rateConstants[Km]->GetValue() + chemicals[phosphorylatedprotein]->GetAmount() + chemicals[competitivebinder]->GetAmount());
}

void CompetitiveDegradationReaction::SetTeXForm() 
{
        return;
}

// TEMPORARY

std::vector<Reaction::JElement *> *CompetitiveDegradationReaction::GetChemicalJacobian()
{
        return &chemicalJacobian;
}

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