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Compound Index

  C  
CEquations   COneGeneInhibitoryNetworkRunDirector   CTrimerDissociation   Minimizer   
CAcceptanceRatioFreeEnergyEstimator   CEvolutionStrategy   COneGeneReplicaMinimizableDirector   CTrimerFormation   
  N  
CAlgebraicChemical   CEvolutionStrategyChromosome   COneGeneStochasticNetworkMinimizableDirector   CVariableStepsizeAnnealMinimizer   NetworkMinimizable   
CAlternateErkSubnetwork   CEvolutionStrategyChromosome::CEvolutionStrategyChromosomeComparator   COneGeneStochasticNetworkRunDirector   CXYPoint   NetworkMinimizableDirector   
CAlternateOneGeneInhibitoryNetwork   CExampleNetwork   CParameterFilter   CXYPoint::CXComparator   NLLSMinimizable   
CAlternateOneGeneInhibitoryNetworkMinimizableDirector   CExampleNetworkMinimizableDirector   CParameterRandomizer   CXYPoint::CYComparator   
  O  
CatalyzedTranslationReaction   CFirstOrderDestructionReaction   CParameterTranslator   CXYVector   Observer   
CBasicQuenchMinimizer   CForcesObserver   CPC12AlternateEnsembleDirector   
  D  
OneGeneInhibitoryNetwork   
CBinaryNetworkDataRelation   CForceVectorPoint   CPC12AlternateMinimizableDirector   DataPoint   
  P  
CCell   CForceVectorPoint::CForceVectorPointComparator   CPC12EGFNGFEnsembleDirector   DataPoint::DataPointComparator   ParameterReader   
CChemicalSink   CForcingData   CPC12EGFNGFRunDirector   
  E  
PC12EGFNGFMinimizableDirector   
CChemicalSource   CForestNitrogenCycleNetwork   CPC12ParameterTranslator   ErkSubnetwork   PlasmidReplicationReaction   
CClonalCommaES   CForestNitrogenCyclingMinimizableDirector   CPC12RapMinusEnsembleDirector   Experiment   PromoterBindingReaction   
CCombinatorialNetwork   CGeometry   CPC12RapMinusMinimizableDirector   
  G  
PromoterUnbindingReaction   
CCombinatorialNetworkMinimizableDirector   Chemical   CPC12RapMinusNetwork   GenerationReaction   ProteinTranslationReaction   
CCombinatorialNetworksSloppyMinimizableDirector   ChemicalTimeSeriesData   CPeriodicQuenchMinimizer   GeneticCode   
  R  
CCombinatorialRunDirector   ChemicalTransportReaction   CPoolTransitionReaction   GnuPlotter   Rand   
CCommaStrategyOne   CIdentityParameterFilter   CPositiveDefiniteLevenbergMarquardtMinimizer   GnuPlotterCostObserver   RateConstant   
CComponents   CImprovedLevenbergMarquardtMinimizer   CQualityControlCashKarpMover   GnuPlotterDirectorObserver   Reaction   
CConjugateGradientMinimizer   CIntegration   CQualityControlRK2TMover   GnuPlotterEnsembleDataDirectorObserver   Reaction::JElement   
CConjugateGradientObserver   CLaubLoomisDictyNetwork   CQualityControlRungeKuttaMover   GnuPlotterEnsembleRunDirectorObserver   ReactionNetwork   
CConstantSinkReaction   CLaubLoomisDictyNetworkEnsembleDirector   CQuorumSensingEnsembleDirector   GnuPlotterParameterScatterPlot   ReceptorBindingReaction   
CConstantSourceReaction   CLaubLoomisDictyNetworkMinimizableDirector   CQuorumSensingNetwork   GnuPlotterResidualScatterPlot   ReceptorUnbindingReaction   
CContinuousTimeMonteCarloMover   CLaubLoomisDictyRunDirector   CQuorumSensingNetworkMinimizableDirector   GnuPlotterRunnableObserver   RNADegradationReaction   
CConversionFactor   CLeastSquaresADMinimizer   CQuorumSensingRunDirector   GnuPlotterSimulatedAnnealingObserver   RowColumnSparseMatrix   
CCoupledOneGeneNetworksMinimizableDirector   CLeastSquaresMinimizer   CReactionMover   GnuPlotterSingleRun   RowColumnSparseMatrix::MatrixElement   
CCoupledPC12NetworksMinimizableDirector   CLeastSquaresObserver   CReplicaMinimizableDirector   GnuPlotterTimeSeriesObserver   RowColumnSparseMatrix::MatrixElement::MatrixElementComparator   
CCoupledReplicasMinimizableDirector   CLevenbergMarquardtMinimizer   CRK2ExplicitEulerHybridMover   GnuPlotterTimeSeriesSharedBFactorObserver   
  S  
CCurrentToCurrentRatioChemical   CLogChemical   CRK2TMover   GnuPlotterTrajectoryObserver   SharedBFactorNetworkMinimizable   
CCurrentToInitialRatioChemical   CLogParameterFilter   CRK4Mover   
  H  
SingleNetworkMinimizable   
CDifferentialEquationMover   CLowDimensionalCostFunctionMapper   CRobustLevenbergMarquardtMinimizer   HeterodimerDissociationReaction   SmallErkSubnetwork   
CDirector   CMartielGoldbeterDictyNetwork   CRunDirector   HeterodimerizationReaction   SparseMatrix   
CDisplay   CMartielGoldbeterDictyNetworkMinimizableDirector   CRungeKuttaMover   HomodimerDissociationReaction   Subject   
CDNA   CMatrixOperations   CRunnable   HomodimerizationReaction   
  T  
CEGFRTraffickingCHOMinimizableDirector   CMDOChemical   CScaleInvariantMarquardtMinimizer   
  L  
TimeVectorPoint   
CEGFRTraffickingCoupledMinimizableDirector   CMichaelisMentenHeterodimerizationReaction   CSharedParametersMinimizableDirector   LocateInputFileDirectory   TimeVectorPoint::TimeVectorPointComparator   
CEGFRTraffickingEnsembleDirector   CMixedReactionMover   CSharedPC12NetworksMinimizableDirector   
  M  
TranscriptionInducedByBindingReaction   
CEGFRTraffickingIdealCellMinimizableDirector   CMixedReactionNetwork   CSimulatedAnnealingStrategy   MichaelisMentenDephosphorylationReaction   TranscriptionInhibitedByBindingReaction   
CEGFRTraffickingMinimizableDirector   CNelderMeadSimplexMinimizer   CSloppyDataMinimizableDirector   MichaelisMentenGProteinActivationReaction   TranscriptionReaction   
CEGFRTraffickingNetwork   CNormalizedLinearAmplifier   CSquareRootParameterFilter   MichaelisMentenGProteinDeactivationReaction   TransformationReaction   
CEGFRTraffickingNIH3T3MinimizableDirector   CNormalizedLinearAttenuator   CStiffBulirschStoerMover   MichaelisMentenPhosphorylationReaction   TranslationModelMinimizable   
CEGFRTraffickingPredictionNetwork   CompetitiveDegradationReaction   CStochasticSensitivityAnalysis   MichaelisMentenProteinProteinActivationReaction   
  U  
CEGFRTraffickingRunDirector   ConcentrationObserver   CSumChemical   MichaelisMentenProteinProteinDeactivationReaction   UnaryDegradationReaction   
CellAverageObserver   COneGeneEnsembleDirector   CSynchronizedCashKarpMover   MichaelisMentenReaction   UnstableProteinDegradationReaction   
CEnsembleCombinationDirector   COneGeneEnsembleRunDirector   CSynchronizedRungeKuttaMover   MichaelisMentenTransformationReaction   
  Z  
CEnsembleMember   COneGeneInhibitoryAveragingDirector   CTauNetwork   Minimizable   ZeroTAnnealMinimizer   
CEnsembleRunDirector   COneGeneInhibitoryNetworkMinimizableDirector   CTauReaction   
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