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ConstantSinkReaction.cpp

Go to the documentation of this file.

// ConstantSinkReaction.cpp: implementation of the CConstantSinkReaction class.
//

#include "ConstantSinkReaction.h"

// Construction/Destruction

CConstantSinkReaction::CConstantSinkReaction(Chemical *ChangedChemical, RateConstant *k_sink, std::string reactionName)
:Reaction(reactionName)
{
        // stoichiometry
        this->ChangedChemical = chemicals.size();
        chemicals.push_back(ChangedChemical);
        numberOfEachChemicalChangedByReaction.push_back(-1);

        // rates
        this->k_sink = rateConstants.size();
        rateConstants.push_back(k_sink);

        // put enough dummy chemicalJacobian elements on the vector 
        // - they are recomputed every time you ask for the chemicalJacobian
        chemicalJacobian.push_back(new JElement(-1,-1));

        this->SetTeXForm();

}

CConstantSinkReaction::~CConstantSinkReaction()
{

}

double CConstantSinkReaction::GetRate() const
{
        return rateConstants[k_sink]->GetValue();
}

void CConstantSinkReaction::SetTeXForm()
{
        strstream stream;
        // TeX form of the reaction
        stream << rateConstants[k_sink]->GetTeXName().c_str();
        stream << ends;
        // set the TeX string equal to what's in the stream
        m_sTeXForm = stream.str();
        // allow memory to be freed
        stream.rdbuf()->freeze(0);
}

std::vector<Reaction::JElement *> *CConstantSinkReaction::GetChemicalJacobian()
{
        chemicalJacobian[0]->SetWithRespectTo(chemicals[ChangedChemical]->GetChemicalNumber());
        chemicalJacobian[0]->SetJValue(0.0);
        
        return &chemicalJacobian;
}

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