00001 #ifdef _WINDOWS 00002 //#include "stdafx.h" 00003 //#include <crtdbg.h> 00004 #endif 00005 00006 // debugging only 00007 //#define _CRT_DEBUG_MAP_ALLOC 00008 #include <stdlib.h> 00009 //#include <crtdbg.h> 00010 00011 #include <time.h> 00012 #include <fstream> 00013 #include <iostream> 00014 #include <string.h> 00015 00016 #include "AcceptanceRatioFreeEnergyEstimator.h" 00017 #include "AlgebraicChemical.h" 00018 #include "BinaryNetworkDataRelation.h" 00019 #include "CellAverageObserver.h" 00020 #include "Chemical.h" 00021 #include "ChemicalTimeSeriesData.h" 00022 #include "ConcentrationObserver.h" 00023 #include "ConjugateGradientObserver.h" 00024 #include "ConversionFactor.h" 00025 #include "CoupledReplicasMinimizableDirector.h" 00026 #include "DataPoint.h" 00027 #include "Director.h" 00028 #include "EnsembleCombinationDirector.h" 00029 #include "EnsembleMember.h" 00030 #include "EnsembleRunDirector.h" 00031 #include "ExampleNetwork.h" 00032 #include "ExampleNetworkMinimizableDirector.h" 00033 #include "Experiment.h" 00034 #include "ForcesObserver.h" 00035 #include "ForceVectorPoint.h" 00036 #include "ForcingData.h" 00037 #include "IdentityParameterFilter.h" 00038 #include "LocateInputFileDirectory.h" 00039 #include "LogChemical.h" 00040 #include "LogParameterFilter.h" 00041 #include "LowDimensionalCostFunctionMapper.h" 00042 #include "MatrixOperations.h" 00043 #include "Minimizable.h" 00044 #include "MixedReactionNetwork.h" 00045 #include "NetworkMinimizable.h" 00046 #include "NetworkMinimizableDirector.h" 00047 #include "NLLSMinimizable.h" 00048 #include "ParameterFilter.h" 00049 #include "ParameterRandomizer.h" 00050 #include "ParameterReader.h" 00051 #include "ParameterTranslator.h" 00052 #include "Rand.h" 00053 #include "RateConstant.h" 00054 #include "Reaction.h" 00055 #include "ReactionNetwork.h" 00056 #include "ReplicaMinimizableDirector.h" 00057 #include "RowColumnSparseMatrix.h" 00058 #include "RunDirector.h" 00059 #include "Runnable.h" 00060 #include "SharedBFactorNetworkMinimizable.h" 00061 #include "SharedParametersMinimizableDirector.h" 00062 #include "SingleNetworkMinimizable.h" 00063 #include "SloppyDataMinimizableDirector.h" 00064 #include "SparseMatrix.h" 00065 #include "SquareRootParameterFilter.h" 00066 #include "StochasticSensitivityAnalysis.h" 00067 #include "SubjectObserver.h" 00068 #include "SumChemical.h" 00069 #include "TauNetwork.h" 00070 #include "TimeVectorPoint.h" 00071 #include "typedefs.h" 00072 #include "XYPoint.h" 00073 #include "XYVector.h" 00074 #include "GnuPlotterMaster.h" 00075 #include "MinimizerMaster.h" 00076 #include "MoverMaster.h" 00077 #include "ReactionsMaster.h" 00078
1.2.14 written by Dimitri van Heesch,
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