OneGeneInhibitoryNetworkMinimizableDirector.h Source File

00001 // OneGeneInhibitoryNetworkMinimizableDirector.h: interface for the OneGeneInhibitoryNetworkMinimizableDirector class.
00002 //
00004 
00005 #if !defined(AFX_ONEGENEINHIBITORYNETWORKMINIMIZABLEDIRECTOR_H__B74BCAB8_23E7_4DFD_A6AA_8BDC0AD66559__INCLUDED_)
00006 #define AFX_ONEGENEINHIBITORYNETWORKMINIMIZABLEDIRECTOR_H__B74BCAB8_23E7_4DFD_A6AA_8BDC0AD66559__INCLUDED_
00007 
00008 #if _MSC_VER > 1000
00009 #pragma once
00010 #endif // _MSC_VER > 1000
00011 
00012 #include "NetworkMinimizableDirector.h"
00013 #include "OneGeneInhibitoryNetwork.h"
00014 #include "QualityControlRungeKuttaMover.h"
00015 #include "QualityControlCashKarpMover.h"
00016 #include "QualityControlRK2TMover.h"
00017 #include "GnuPlotterTimeSeriesObserver.h"
00018 #include "RK2ExplicitEulerHybridMover.h"
00019 #include "SynchronizedCashKarpMover.h"
00020 #include "RK2TMover.h"
00021 #include "RK4Mover.h"
00022 #include "Experiment.h"
00023 #include "typedefs.h"
00024 #include "LocateInputFileDirectory.h"
00025 
00027 // While the one-gene inhibitory network is not realistic, it is a useful
00028 // testbed for new functionality (integrators, optimizers, analysis 
00029 // routines) largely because of its small size and understandable behavior.
00030 // The director reads in fake data (produced by the simulation itself).
00032 
00033 class COneGeneInhibitoryNetworkMinimizableDirector : public NetworkMinimizableDirector  
00034 {
00035 public:
00036         COneGeneInhibitoryNetworkMinimizableDirector();
00037         virtual ~COneGeneInhibitoryNetworkMinimizableDirector();
00038         double GetParameter(int parIndex);
00039         int GetNParameters();
00040 private:
00041         // From pure virtual function in NetworkMinimizableDirector
00042         void DefineExperiments();
00043 protected:
00044         vpGnuPlotter m_vpPlotterList;
00045 };
00046 
00047 #endif // !defined(AFX_ONEGENEINHIBITORYNETWORKMINIMIZABLEDIRECTOR_H__B74BCAB8_23E7_4DFD_A6AA_8BDC0AD66559__INCLUDED_)