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Reaction.cpp

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// Reaction.cpp: implementation of the Reaction class.
//

#ifdef _WINDOWS
#include "stdafx.h"
#endif

#include "Reaction.h"

// Construction/Destruction

Reaction::Reaction()
{

}

Reaction::Reaction(std::string reactionName)
{
        this->reactionName = reactionName;
}

Reaction::~Reaction()
{
        // WARNING:
        // chemicals and rate constants have already been deleted in the network
        // so don't delete them here!

        // clean up jacobian
        for(int i = 0; i < chemicalJacobian.size(); i++)
        {
                delete chemicalJacobian[i];
        }
}

std::vector<Chemical *> *Reaction::GetChemicals()
{
        return &chemicals;
}

void Reaction::DoReactionOnce()
{
        // Iterate over chemicals: change amount of each 
        int numChemicals = chemicals.size();
        for (int i=0; i<numChemicals; i++)
        {
                chemicals[i]->IncrementAmount(numberOfEachChemicalChangedByReaction[i]);
        }

}

int Reaction::GetNumberChangedByReaction(int chemicalNumber)
{
        return numberOfEachChemicalChangedByReaction[chemicalNumber];
}

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