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AlgebraicChemical.cpp

Go to the documentation of this file.

// AlgebraicChemical.cpp: implementation of the CAlgebraicChemical class.
//

#include "AlgebraicChemical.h"

// Construction/Destruction

CAlgebraicChemical::CAlgebraicChemical(int chemicalNumber, std::string name, std::vector<Chemical *> chemRefVector)
{
        int i;
        this->chemicalNumber = chemicalNumber;
        this->name = name;
        // load up reference vector
        for(i = 0; i < chemRefVector.size(); i++)
        {
                m_vpChemRefVector.push_back(chemRefVector[i]);
        }
        this->SetTeXName();
}

CAlgebraicChemical::CAlgebraicChemical(int chemicalNumber, std::string name, std::vector<Chemical *> chemRefVector, std::vector<RateConstant *> rateRefVector)
{
        int i;
        this->chemicalNumber = chemicalNumber;
        this->name = name;
        // load up reference vectors
        for(i = 0; i < chemRefVector.size(); i++)
        {
                m_vpChemRefVector.push_back(chemRefVector[i]);
        }
        for(i = 0; i < rateRefVector.size(); i++)
        {
                m_vpRateRefVector.push_back(rateRefVector[i]);
        }
        this->SetTeXName();
}


CAlgebraicChemical::~CAlgebraicChemical()
{
        // don't delete the ref vectors here - pointers to chemicals 
        // get deleted elsewhere
}

void CAlgebraicChemical::SetAll()
{
        this->SetAmount(0);
        this->SetInitialAmount(0);
        this->SetErrorInInitialAmount(0);
}

void CAlgebraicChemical::SetAmount(double amount)
{
        this->ComputeAmount();
}

void CAlgebraicChemical::SetInitialAmount(double initialAmount)
{
        this->ComputeInitialAmount();
}

void CAlgebraicChemical::SetErrorInInitialAmount(double errorInInitialAmount)
{
        this->ComputeErrorInInitialAmount();
}

void CAlgebraicChemical::IncrementAmount(double change)
{
        // do nothing 
}

void CAlgebraicChemical::Reset()
{
        // should be relatively safe - if a global ChemicalReset() is 
        // called, the reference chemicals will have been updated first
        // since they must be created first and will thus occupy a lower
        // position in the list
        this->ComputeInitialAmount();
        amount = initialAmount;
}

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