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CAlgebraicChemical Class Reference

#include <AlgebraicChemical.h>

Inheritance diagram for CAlgebraicChemical:

[legend]Collaboration diagram for CAlgebraicChemical:

[legend]List of all members.

Public Methods
	CAlgebraicChemical (int chemicalNumber, std::string name, std::vector< Chemical * > chemRefVector)
	CAlgebraicChemical (int chemicalNumber, std::string name, std::vector< Chemical * > chemRefVector, std::vector< RateConstant * > rateRefVector)
virtual	~CAlgebraicChemical ()
virtual void	SetAmount (double amount)
virtual void	SetInitialAmount (double initialAmount)
virtual void	SetErrorInInitialAmount (double errorInInitialAmount)
virtual void	IncrementAmount (double change)
virtual void	Reset ()
void	SetAll ()
Protected Methods
virtual void	ComputeAmount ()=0
virtual void	ComputeInitialAmount ()=0
virtual void	ComputeErrorInInitialAmount ()=0
Protected Attributes
std::vector< Chemical * >	m_vpChemRefVector
std::vector< RateConstant * >	m_vpRateRefVector

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Constructor & Destructor Documentation

CAlgebraicChemical::CAlgebraicChemical (  int    chemicalNumber, std::string    name, std::vector< Chemical * >    chemRefVector )

Definition at line 11 of file AlgebraicChemical.cpp. References Chemical::chemicalNumber, m_vpChemRefVector, Chemical::name, and Chemical::SetTeXName.

CAlgebraicChemical::CAlgebraicChemical (  int    chemicalNumber, std::string    name, std::vector< Chemical * >    chemRefVector, std::vector< RateConstant * >    rateRefVector )

Definition at line 24 of file AlgebraicChemical.cpp. References Chemical::chemicalNumber, m_vpChemRefVector, m_vpRateRefVector, Chemical::name, and Chemical::SetTeXName.

CAlgebraicChemical::~CAlgebraicChemical (    )  [virtual]

Definition at line 42 of file AlgebraicChemical.cpp.

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Member Function Documentation

virtual void CAlgebraicChemical::ComputeAmount (    )  [protected, pure virtual]

Implemented in CMDOChemical. Referenced by SetAmount.

virtual void CAlgebraicChemical::ComputeErrorInInitialAmount (    )  [protected, pure virtual]

Implemented in CMDOChemical. Referenced by SetErrorInInitialAmount.

virtual void CAlgebraicChemical::ComputeInitialAmount (    )  [protected, pure virtual]

Implemented in CMDOChemical. Referenced by Reset, and SetInitialAmount.

void CAlgebraicChemical::IncrementAmount (  double    change )  [virtual]

Reimplemented from Chemical. Definition at line 70 of file AlgebraicChemical.cpp.

void CAlgebraicChemical::Reset (    )  [virtual]

Reimplemented from Chemical. Definition at line 75 of file AlgebraicChemical.cpp. References Chemical::amount, ComputeInitialAmount, and Chemical::initialAmount.

void CAlgebraicChemical::SetAll (    )

Definition at line 48 of file AlgebraicChemical.cpp. References SetAmount, SetErrorInInitialAmount, and SetInitialAmount. Referenced by CEGFRTraffickingNetwork::CEGFRTraffickingNetwork, CEGFRTraffickingPredictionNetwork::CEGFRTraffickingPredictionNetwork, and CQuorumSensingNetwork::CQuorumSensingNetwork.

void CAlgebraicChemical::SetAmount (  double    amount )  [virtual]

Reimplemented from Chemical. Definition at line 55 of file AlgebraicChemical.cpp. References ComputeAmount. Referenced by SetAll.

void CAlgebraicChemical::SetErrorInInitialAmount (  double    errorInInitialAmount )  [virtual]

Reimplemented from Chemical. Definition at line 65 of file AlgebraicChemical.cpp. References ComputeErrorInInitialAmount. Referenced by SetAll.

void CAlgebraicChemical::SetInitialAmount (  double    initialAmount )  [virtual]

Reimplemented from Chemical. Definition at line 60 of file AlgebraicChemical.cpp. References ComputeInitialAmount. Referenced by SetAll.

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Member Data Documentation

std::vector<Chemical *> CAlgebraicChemical::m_vpChemRefVector [protected]

Definition at line 42 of file AlgebraicChemical.h. Referenced by CAlgebraicChemical, CSumChemical::ComputeAmount, CMDOChemical::ComputeAmount, CLogChemical::ComputeAmount, CCurrentToInitialRatioChemical::ComputeAmount, CCurrentToCurrentRatioChemical::ComputeAmount, CSumChemical::ComputeErrorInInitialAmount, CLogChemical::ComputeErrorInInitialAmount, CCurrentToInitialRatioChemical::ComputeErrorInInitialAmount, CCurrentToCurrentRatioChemical::ComputeErrorInInitialAmount, CSumChemical::ComputeInitialAmount, CLogChemical::ComputeInitialAmount, CCurrentToInitialRatioChemical::ComputeInitialAmount, and CCurrentToCurrentRatioChemical::ComputeInitialAmount.

std::vector<RateConstant *> CAlgebraicChemical::m_vpRateRefVector [protected]

Definition at line 44 of file AlgebraicChemical.h. Referenced by CAlgebraicChemical, CMDOChemical::ComputeAmount, and CMDOChemical::ComputeInitialAmount.

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The documentation for this class was generated from the following files:

• AlgebraicChemical.h
• AlgebraicChemical.cpp

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