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ChemicalTimeSeriesData.h

Go to the documentation of this file.

// ChemicalTimeSeriesData.h: interface for the ChemicalTimeSeriesData class.
//

#if !defined(AFX_CHEMICALTIMESERIESDATA_H__DF38E9BB_9342_4B5F_8516_BBAECCE50783__INCLUDED_)
#define AFX_CHEMICALTIMESERIESDATA_H__DF38E9BB_9342_4B5F_8516_BBAECCE50783__INCLUDED_

#if _MSC_VER > 1000
#pragma once
#endif // _MSC_VER > 1000

#ifdef _WIN32
#include <strstream>
#endif

#include "DataPoint.h"
#include "TimeVectorPoint.h"
#include "ReactionNetwork.h"
#include "typedefs.h"
#include <string>
#include <algorithm>
#include <fstream>
#include <sstream>
//#include <strstrea.h>
#include <assert.h>
#include <stdexcept>


class ChemicalTimeSeriesData : public DataPoint  
{
public:
        ChemicalTimeSeriesData(ReactionNetwork *reactionNetwork, std::string fileName);
        ChemicalTimeSeriesData(ReactionNetwork *reactionNetwork);
        virtual ~ChemicalTimeSeriesData();
        std::vector<DataPoint *> GetTimeSeries(int chemIndex);
        std::vector<TimeVectorPoint *> GetTimeVector() {return timeVector;}
        void AttachNewTimeSeries(ReactionNetwork *reactionNetwork, std::string fileName);
        void SortChemTimeSeriesData();
        void SortTimeVector();
        void TimeVectorSynchronize();
        // searches the time vector and returns the next time stored in 
        // the time vector (indicating there is data at that time) >= the
        // time given to the function
        double GetNextDataTime(double time);
        double GetLatestDataTime();
        int GetNDataPoints();
        int GetNTimeSeries();
        int GetNChemicals();
private:
        int nChem;
        int nTimeSeries;
        // Units will be used later for different experimental data formats 
        // (fold over basal, % total, etc.)
        std::string m_sUnits;
        std::vector<TimeVectorPoint *> timeVector;
        vvpDataPoint chemData;
};

#endif // !defined(AFX_CHEMICALTIMESERIESDATA_H__DF38E9BB_9342_4B5F_8516_BBAECCE50783__INCLUDED_)

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