---

Components.h

Go to the documentation of this file.

// Components.h: interface for the CComponents class.
//

#if !defined(AFX_COMPONENTS_H__B03B7767_4F0E_11D3_8AFC_00105AC65E34__INCLUDED_)
#define AFX_COMPONENTS_H__B03B7767_4F0E_11D3_8AFC_00105AC65E34__INCLUDED_

#if _MSC_VER >= 1000
#pragma once
#endif // _MSC_VER >= 1000

class CCell;

#define NBIOVARS 20

class CComponents  
{
public:
        
        void NextY();
        void Divide();
        void ResetY(int i);
        double GetDY9();
        double GetDY8S();
        double GetDY6S();
        void FirstInt();
        double GetY(int i);
        void StartAverages();
        void Initialize();
        void Integrate();
        CComponents(const CComponents& rComp, CCell* pCell);
        int test;
        CComponents(CCell* pCell);              //constructor
        virtual ~CComponents();
        CComponents& operator=(const CComponents& rhs); //assignment operator
        CComponents(const CComponents& rComp);                  //copy constructor
        double DT;              //Time step
        double DEV;             //Allowable deviation in corrector
private:
        int ITN;
        int NT2;
        void Flux(double* Y, double* DY);
        void CheckNegConc();
        void TruncatedError();
        void DecideStepSize();
        void PredictorCorrector();
        CComponents();                                  //default constructor not to be used
        CCell* m_pCell;                                 //pointer to parent cell
        int NDimensions;                                //Number of dimensions
        double InitialValues[NBIOVARS];                 //dynamically allocated initial values array
        double Averages[NBIOVARS];                      //array for time average of component over a generation
        double KR[27];                  //ratio for adjusting kinetics
        double Y0[NBIOVARS];
        double Y1[NBIOVARS];
        double Y2[NBIOVARS];
        double Y2EST[NBIOVARS];
        double E3Rate;                          //Rate constant for E3
        //double CPDnaA;                //Rate of DnaA production
        double TotalTime;       //For computing averages
        double Y[NBIOVARS];             //array of components
        double DY6S;            //Protein synthesis
        double DY8S;            //DNA synthesis
        double DY9;                     //Cell envelope synthesis
        double CA1;                     //External ammonium ion concentration
        double CA2;                     //External glucose concentration
        double CA3;         //external ribonucleotide concentration
};

#endif  

---