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DNA.h

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// DNA.h: interface for the CDNA class.
//

#if !defined(AFX_DNA_H__B03B7764_4F0E_11D3_8AFC_00105AC65E34__INCLUDED_)
#define AFX_DNA_H__B03B7764_4F0E_11D3_8AFC_00105AC65E34__INCLUDED_

#if _MSC_VER >= 1000
#pragma once
#endif // _MSC_VER >= 1000

class CCell;

class CDNA  
{
public:
        int CheckTerm();
        void Divide();
        double OddGD();
        void AdvanceFork();
        void OldInit();
        void Termination();
        void ComputeBoxes();
        void EcoInit();
        CDNA(const CDNA& rDNA, CCell* pCell);
        CDNA(CCell* pCell);             //Constructor
        virtual ~CDNA();
        int NTOT;
        int NORG;
        double MidBound;

private:
        int NFTERM;
        double gamma(double Z);
        double Equilibrium();
        CDNA();                 //Default, not to be used
        CCell* m_pCell; //Pointer to the parent cell
        double GD;                              //Gene dosage
        int NPOS;                       //Number of fork positions
        double DnaABoxes[3];            //number of DnaA boxes
        int NumForks[3];                        //Number of replicating forks in DNA (formerly NF)
        double ForkPos[3];      //Fork position (% total DNA length, formerly FPOS)
        double TotalGD;
        int NumChrome;                  //Number of chromosomes
        double DnaA;
        double Kd[3];
};

#endif // !defined(AFX_DNA_H__B03B7764_4F0E_11D3_8AFC_00105AC65E34__INCLUDED_)

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