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CDNA Class Reference

#include <DNA.h>

Collaboration diagram for CDNA:

[legend]List of all members.

Public Methods
int	CheckTerm ()
void	Divide ()
double	OddGD ()
void	AdvanceFork ()
void	OldInit ()
void	Termination ()
void	ComputeBoxes ()
void	EcoInit ()
	CDNA (const CDNA &rDNA, CCell *pCell)
	CDNA (CCell *pCell)
virtual	~CDNA ()
Public Attributes
int	NTOT
int	NORG
double	MidBound
Private Methods
double	gamma (double Z)
double	Equilibrium ()
	CDNA ()
Private Attributes
int	NFTERM
CCell *	m_pCell
double	GD
int	NPOS
double	DnaABoxes [3]
int	NumForks [3]
double	ForkPos [3]
double	TotalGD
int	NumChrome
double	DnaA
double	Kd [3]

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Constructor & Destructor Documentation

CDNA::CDNA (  const CDNA &    rDNA, CCell *    pCell )

Definition at line 53 of file DNA.cpp. References m_pCell.

CDNA::CDNA (  CCell *    pCell )

Definition at line 16 of file DNA.cpp. References DnaA, DnaABoxes, ForkPos, GD, Kd, m_pCell, MidBound, NFTERM, NORG, NPOS, NTOT, NumChrome, NumForks, and TotalGD.

CDNA::~CDNA (    )  [virtual]

Definition at line 47 of file DNA.cpp.

CDNA::CDNA (    )  [private]

Definition at line 42 of file DNA.cpp.

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Member Function Documentation

void CDNA::AdvanceFork (    )

Definition at line 180 of file DNA.cpp. References CComponents::DT, ForkPos, CCell::GetComponents, CComponents::GetDY8S, m_pCell, NPOS, and NTOT.

int CDNA::CheckTerm (    )

Definition at line 266 of file DNA.cpp. References NFTERM. Referenced by CGeometry::UpdateShape.

void CDNA::ComputeBoxes (    )

Definition at line 129 of file DNA.cpp. References DnaABoxes, ForkPos, and NumChrome. Referenced by EcoInit.

void CDNA::Divide (    )

Definition at line 252 of file DNA.cpp. References DnaA, GD, NORG, NPOS, NTOT, NumChrome, and NumForks. Referenced by CCell::Division.

void CDNA::EcoInit (    )

Definition at line 60 of file DNA.cpp. References ComputeBoxes, DnaA, DnaABoxes, CComponents::DT, Equilibrium, ForkPos, gamma, CCell::GetComponents, CComponents::GetDY6S, CCell::GetGeometry, CGeometry::GetVolume, CComponents::GetY, Kd, m_pCell, MidBound, NORG, NPOS, NTOT, NumChrome, NumForks, and TotalGD.

double CDNA::Equilibrium (    )  [private]

Definition at line 191 of file DNA.cpp. References DnaA, DnaABoxes, CCell::GetGeometry, CGeometry::GetVolume, Kd, and m_pCell. Referenced by EcoInit.

double CDNA::gamma (  double    Z )  [private]

Definition at line 219 of file DNA.cpp. References CDisplay::ErrorMessage, CCell::GetDisplay, and m_pCell. Referenced by EcoInit.

double CDNA::OddGD (    )

Definition at line 232 of file DNA.cpp. Referenced by CComponents::Flux.

void CDNA::OldInit (    )

Definition at line 174 of file DNA.cpp.

void CDNA::Termination (    )

Definition at line 157 of file DNA.cpp. References ForkPos, NFTERM, NPOS, NTOT, NumChrome, and NumForks.

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Member Data Documentation

double CDNA::DnaA [private]

Definition at line 45 of file DNA.h. Referenced by CDNA, Divide, EcoInit, and Equilibrium.

double CDNA::DnaABoxes[3] [private]

Definition at line 40 of file DNA.h. Referenced by CDNA, ComputeBoxes, EcoInit, and Equilibrium.

double CDNA::ForkPos[3] [private]

Definition at line 42 of file DNA.h. Referenced by AdvanceFork, CDNA, ComputeBoxes, EcoInit, and Termination.

double CDNA::GD [private]

Definition at line 38 of file DNA.h. Referenced by CDNA, and Divide.

double CDNA::Kd[3] [private]

Definition at line 46 of file DNA.h. Referenced by CDNA, EcoInit, and Equilibrium.

CCell* CDNA::m_pCell [private]

Definition at line 37 of file DNA.h. Referenced by AdvanceFork, CDNA, EcoInit, Equilibrium, and gamma.

double CDNA::MidBound

Definition at line 30 of file DNA.h. Referenced by CDNA, EcoInit, and CComponents::Flux.

int CDNA::NFTERM [private]

Definition at line 33 of file DNA.h. Referenced by CDNA, CheckTerm, and Termination.

int CDNA::NORG

Definition at line 29 of file DNA.h. Referenced by CDNA, Divide, EcoInit, and CComponents::Flux.

int CDNA::NPOS [private]

Definition at line 39 of file DNA.h. Referenced by AdvanceFork, CDNA, Divide, EcoInit, and Termination.

int CDNA::NTOT

Definition at line 28 of file DNA.h. Referenced by AdvanceFork, CDNA, Divide, EcoInit, CComponents::Flux, and Termination.

int CDNA::NumChrome [private]

Definition at line 44 of file DNA.h. Referenced by CDNA, ComputeBoxes, Divide, EcoInit, and Termination.

int CDNA::NumForks[3] [private]

Definition at line 41 of file DNA.h. Referenced by CDNA, Divide, EcoInit, and Termination.

double CDNA::TotalGD [private]

Definition at line 43 of file DNA.h. Referenced by CDNA, and EcoInit.

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The documentation for this class was generated from the following files:

• DNA.h
• DNA.cpp

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