MixedReactionNetwork.h Source File

00001 // MixedReactionNetwork.h: interface for the CMixedReactionNetwork class.
00002 //
00004 
00005 #if !defined(AFX_MIXEDREACTIONNETWORK_H__188826DA_57B1_4AC3_96A7_EFEF7F73E12A__INCLUDED_)
00006 #define AFX_MIXEDREACTIONNETWORK_H__188826DA_57B1_4AC3_96A7_EFEF7F73E12A__INCLUDED_
00007 
00008 #if _MSC_VER > 1000
00009 #pragma once
00010 #endif // _MSC_VER > 1000
00011 
00012 #include <algorithm>
00013 #include "ReactionNetwork.h"
00014 #include "typedefs.h"
00015 
00016 class CMixedReactionNetwork : public ReactionNetwork  
00017 {
00018 public:
00019         CMixedReactionNetwork();
00020         CMixedReactionNetwork(ReactionNetwork *pReactionNetwork, intVector stocReactionList);
00021         virtual ~CMixedReactionNetwork();
00022         int GetNumberOfChemicals() const;
00023         int GetNumberOfReactions() const;
00024         int GetNumberOfRateConstants() const;
00025         Chemical *GetChemical(int chemicalNumber);
00026         RateConstant *GetRateConstant(int rateConstantNumber);
00027         void ChemicalReset();
00028         void RateConstantReset();
00029         void SetAmount(int chemicalNumber, double amount);
00030         vpReaction *GetReactions();
00031         Reaction *GetReaction(int reactionNumber);
00032         vpReaction *GetStochasticReactions();
00033         Reaction *GetStochasticReaction(int reactionNumber);
00034         vpReaction *GetDeterministicReactions();
00035         Reaction *GetDeterministicReaction(int reactionNumber);
00036         vpChemical *GetChemicals();
00037         vpRateConstant *GetRateConstants();
00038         int GetNumberOfStochasticReactions() const;
00039         int GetNumberOfDeterministicReactions() const;
00040         dblVector *GetReactionRates();
00041         dblVector *GetStochasticReactionRates();
00042         dblVector *GetDeterministicReactionRates();
00043         double GetTotalStochasticReactionProbability();
00044 private:
00045         ReactionNetwork *m_pReactionNetwork;
00046         intVector m_viStochasticList;
00047         vpReaction m_vpStochasticReactions;
00048         vpReaction m_vpDeterministicReactions;
00049         dblVector m_dStochasticReactionRates;
00050         dblVector m_dDeterministicReactionRates;
00051 };
00052 
00053 #endif // !defined(AFX_MIXEDREACTIONNETWORK_H__188826DA_57B1_4AC3_96A7_EFEF7F73E12A__INCLUDED_)