| _experimentList | NetworkMinimizableDirector | [protected] |
| _minimizableList | NetworkMinimizableDirector | [protected] |
| _moverList | NetworkMinimizableDirector | [protected] |
| _networkList | NetworkMinimizableDirector | [protected] |
| Allocate(int nResiduals) | NLLSMinimizable | |
| CAlternateOneGeneInhibitoryNetworkMinimizableDirector() | CAlternateOneGeneInhibitoryNetworkMinimizableDirector | |
| ComputeES(double *parameters, double T) | NetworkMinimizableDirector | [virtual] |
| ComputeResiduals(double *parameters) | NetworkMinimizableDirector | [virtual] |
| DefineExperiments() | CAlternateOneGeneInhibitoryNetworkMinimizableDirector | [private, virtual] |
| DumpResidualInfo() | NetworkMinimizableDirector | [virtual] |
| EntropyShift(double T) | NetworkMinimizableDirector | [virtual] |
| F(double *parameters, double T) | NetworkMinimizableDirector | [virtual] |
| F0(double *parameters, double T) | NetworkMinimizableDirector | [virtual] |
| GetEnergyLastComputed() | Minimizable | [inline, virtual] |
| GetEntropyLastComputed() | Minimizable | [inline, virtual] |
| GetMover(int moverIndex) | NetworkMinimizableDirector | [inline, virtual] |
| GetNExperiments() const | NetworkMinimizableDirector | [inline, virtual] |
| GetNParameters() | CAlternateOneGeneInhibitoryNetworkMinimizableDirector | [virtual] |
| GetNResiduals() | NLLSMinimizable | [inline] |
| GetParameter(int parIndex) | CAlternateOneGeneInhibitoryNetworkMinimizableDirector | [virtual] |
| GetReactionNetwork(int networkIndex) | NetworkMinimizableDirector | [inline, virtual] |
| GetResiduals() | NLLSMinimizable | [inline] |
| Gradient(double *parameters) | Minimizable | [inline, virtual] |
| Hessian(double *parameters) | Minimizable | [inline, virtual] |
| m_dEnergyLastComputed | Minimizable | [protected] |
| m_dEntropyLastComputed | Minimizable | [protected] |
| m_dGammaSquared | NetworkMinimizableDirector | [protected] |
| m_iPriorList | NetworkMinimizableDirector | [protected] |
| m_vpPlotterList | CAlternateOneGeneInhibitoryNetworkMinimizableDirector | [protected] |
| NetworkMinimizableDirector() | NetworkMinimizableDirector | |
| NLLSMinimizable() | NLLSMinimizable | |
| nResiduals | NLLSMinimizable | [protected] |
| ObjectiveFunction(double *parameters) | NetworkMinimizableDirector | [virtual] |
| residuals | NLLSMinimizable | [protected] |
| SetNResiduals(int nResiduals) | NLLSMinimizable | [inline] |
| SumOfSquares() | NLLSMinimizable | |
| ~CAlternateOneGeneInhibitoryNetworkMinimizableDirector() | CAlternateOneGeneInhibitoryNetworkMinimizableDirector | [virtual] |
| ~NetworkMinimizableDirector() | NetworkMinimizableDirector | [virtual] |
| ~NLLSMinimizable() | NLLSMinimizable | [virtual] |
