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NLLSMinimizable Class Reference

#include <NLLSMinimizable.h>

Inheritance diagram for NLLSMinimizable:

[legend]Collaboration diagram for NLLSMinimizable:

[legend]List of all members.

Public Methods
	NLLSMinimizable ()
virtual	~NLLSMinimizable ()
void	Allocate (int nResiduals)
double	SumOfSquares ()
virtual double	ObjectiveFunction (double *parameters)
virtual double	ComputeResiduals (double *parameters)=0
virtual double	ComputeES (double *parameters, double T)
virtual double	EntropyShift (double T)=0
virtual double	F (double *parameters, double T)=0
virtual double	F0 (double *parameters, double T)=0
double *	GetResiduals ()
int	GetNResiduals ()
void	SetNResiduals (int nResiduals)
Protected Attributes
double *	residuals
int	nResiduals

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Constructor & Destructor Documentation

NLLSMinimizable::NLLSMinimizable (    )

Definition at line 11 of file NLLSMinimizable.cpp.

NLLSMinimizable::~NLLSMinimizable (    )  [virtual]

Definition at line 16 of file NLLSMinimizable.cpp. References residuals.

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Member Function Documentation

void NLLSMinimizable::Allocate (  int    nResiduals )

Definition at line 21 of file NLLSMinimizable.cpp. References nResiduals, residuals, and SetNResiduals. Referenced by CAlternateOneGeneInhibitoryNetworkMinimizableDirector::CAlternateOneGeneInhibitoryNetworkMinimizableDirector, CCombinatorialNetworkMinimizableDirector::CCombinatorialNetworkMinimizableDirector, CCoupledOneGeneNetworksMinimizableDirector::CCoupledOneGeneNetworksMinimizableDirector, CCoupledPC12NetworksMinimizableDirector::CCoupledPC12NetworksMinimizableDirector, CEGFRTraffickingCHOMinimizableDirector::CEGFRTraffickingCHOMinimizableDirector, CEGFRTraffickingCoupledMinimizableDirector::CEGFRTraffickingCoupledMinimizableDirector, CEGFRTraffickingIdealCellMinimizableDirector::CEGFRTraffickingIdealCellMinimizableDirector, CEGFRTraffickingMinimizableDirector::CEGFRTraffickingMinimizableDirector, CEGFRTraffickingNIH3T3MinimizableDirector::CEGFRTraffickingNIH3T3MinimizableDirector, CExampleNetworkMinimizableDirector::CExampleNetworkMinimizableDirector, CForestNitrogenCyclingMinimizableDirector::CForestNitrogenCyclingMinimizableDirector, CLaubLoomisDictyNetworkMinimizableDirector::CLaubLoomisDictyNetworkMinimizableDirector, CMartielGoldbeterDictyNetworkMinimizableDirector::CMartielGoldbeterDictyNetworkMinimizableDirector, COneGeneInhibitoryNetworkMinimizableDirector::COneGeneInhibitoryNetworkMinimizableDirector, COneGeneReplicaMinimizableDirector::COneGeneReplicaMinimizableDirector, COneGeneStochasticNetworkMinimizableDirector::COneGeneStochasticNetworkMinimizableDirector, CPC12AlternateMinimizableDirector::CPC12AlternateMinimizableDirector, CPC12RapMinusMinimizableDirector::CPC12RapMinusMinimizableDirector, CQuorumSensingNetworkMinimizableDirector::CQuorumSensingNetworkMinimizableDirector, CSharedPC12NetworksMinimizableDirector::CSharedPC12NetworksMinimizableDirector, SingleNetworkMinimizable::Initialize, SharedBFactorNetworkMinimizable::Initialize, PC12EGFNGFMinimizableDirector::PC12EGFNGFMinimizableDirector, and TranslationModelMinimizable::TranslationModelMinimizable.

double NLLSMinimizable::ComputeES (  double *    parameters, double    T )  [virtual]

Implements Minimizable. Reimplemented in NetworkMinimizable. Definition at line 34 of file NLLSMinimizable.cpp. References ComputeResiduals.

virtual double NLLSMinimizable::ComputeResiduals (  double *    parameters )  [pure virtual]

Implemented in CEGFRTraffickingCHOMinimizableDirector. Referenced by ComputeES, and ObjectiveFunction.

virtual double NLLSMinimizable::EntropyShift (  double    T )  [pure virtual]

Implements Minimizable. Implemented in NetworkMinimizable.

virtual double NLLSMinimizable::F (  double *    parameters, double    T )  [pure virtual]

Implements Minimizable. Implemented in NetworkMinimizable. Referenced by CStochasticSensitivityAnalysis::DoAnalysis.

virtual double NLLSMinimizable::F0 (  double *    parameters, double    T )  [pure virtual]

Implements Minimizable. Implemented in NetworkMinimizable.

int NLLSMinimizable::GetNResiduals (    )  [inline]

Definition at line 30 of file NLLSMinimizable.h. References nResiduals. Referenced by CCoupledOneGeneNetworksMinimizableDirector::CCoupledOneGeneNetworksMinimizableDirector, CCoupledPC12NetworksMinimizableDirector::CCoupledPC12NetworksMinimizableDirector, CEGFRTraffickingCHOMinimizableDirector::CEGFRTraffickingCHOMinimizableDirector, CEGFRTraffickingCoupledMinimizableDirector::CEGFRTraffickingCoupledMinimizableDirector, CSharedParametersMinimizableDirector::ComputeResiduals, CCoupledReplicasMinimizableDirector::ComputeResiduals, CSharedPC12NetworksMinimizableDirector::CSharedPC12NetworksMinimizableDirector, CStochasticSensitivityAnalysis::DoAnalysis, CScaleInvariantMarquardtMinimizer::Minimize, CRobustLevenbergMarquardtMinimizer::Minimize, CPositiveDefiniteLevenbergMarquardtMinimizer::Minimize, and CImprovedLevenbergMarquardtMinimizer::Minimize.

double* NLLSMinimizable::GetResiduals (    )  [inline]

Definition at line 29 of file NLLSMinimizable.h. References residuals. Referenced by CStochasticSensitivityAnalysis::ComputeApproximateHessian, CRobustLevenbergMarquardtMinimizer::ComputeDerivativeInformation, CPositiveDefiniteLevenbergMarquardtMinimizer::ComputeDerivativeInformation, CLeastSquaresMinimizer::ComputeDerivativeInformation, CLeastSquaresADMinimizer::ComputeDerivativeInformation, CSharedParametersMinimizableDirector::ComputeResiduals, CCoupledReplicasMinimizableDirector::ComputeResiduals, and CStochasticSensitivityAnalysis::DoAnalysis.

double NLLSMinimizable::ObjectiveFunction (  double *    parameters )  [virtual]

Implements Minimizable. Reimplemented in NetworkMinimizableDirector. Definition at line 27 of file NLLSMinimizable.cpp. References ComputeResiduals. Referenced by CStochasticSensitivityAnalysis::ComputeApproximateHessian, CRobustLevenbergMarquardtMinimizer::ComputeDerivativeInformation, CPositiveDefiniteLevenbergMarquardtMinimizer::ComputeDerivativeInformation, CLeastSquaresMinimizer::ComputeDerivativeInformation, CLeastSquaresADMinimizer::ComputeDerivativeInformation, CStochasticSensitivityAnalysis::ComputeTrueHessian, CScaleInvariantMarquardtMinimizer::Minimize, CRobustLevenbergMarquardtMinimizer::Minimize, CPositiveDefiniteLevenbergMarquardtMinimizer::Minimize, and CImprovedLevenbergMarquardtMinimizer::Minimize.

void NLLSMinimizable::SetNResiduals (  int    nResiduals )  [inline]

Definition at line 31 of file NLLSMinimizable.h. References nResiduals. Referenced by Allocate, and TranslationModelMinimizable::TranslationModelMinimizable.

double NLLSMinimizable::SumOfSquares (    )

Definition at line 41 of file NLLSMinimizable.cpp. References nResiduals, and residuals. Referenced by TranslationModelMinimizable::ComputeResiduals.

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Member Data Documentation

int NLLSMinimizable::nResiduals [protected]

Definition at line 34 of file NLLSMinimizable.h. Referenced by Allocate, CReplicaMinimizableDirector::ComputeResiduals, NetworkMinimizableDirector::ComputeResiduals, CEGFRTraffickingNIH3T3MinimizableDirector::ComputeResiduals, CEGFRTraffickingCHOMinimizableDirector::ComputeResiduals, CCoupledReplicasMinimizableDirector::ComputeResiduals, GetNResiduals, SetNResiduals, SumOfSquares, and TranslationModelMinimizable::TranslationModelMinimizable.

double* NLLSMinimizable::residuals [protected]

Definition at line 33 of file NLLSMinimizable.h. Referenced by Allocate, TranslationModelMinimizable::ComputeResiduals, SingleNetworkMinimizable::ComputeResiduals, CSharedParametersMinimizableDirector::ComputeResiduals, SharedBFactorNetworkMinimizable::ComputeResiduals, CReplicaMinimizableDirector::ComputeResiduals, NetworkMinimizableDirector::ComputeResiduals, CEGFRTraffickingNIH3T3MinimizableDirector::ComputeResiduals, CEGFRTraffickingCHOMinimizableDirector::ComputeResiduals, CCoupledReplicasMinimizableDirector::ComputeResiduals, GetResiduals, SumOfSquares, and ~NLLSMinimizable.

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The documentation for this class was generated from the following files:

• NLLSMinimizable.h
• NLLSMinimizable.cpp

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