Allocate(int nResiduals) | NLLSMinimizable | |
Attach(Observer *o) | Subject | [inline, virtual] |
ComputeES(double *parameters, double T)=0 | NetworkMinimizable | [pure virtual] |
ComputeResiduals(double *parameters)=0 | NetworkMinimizable | [pure virtual] |
Detach(Observer *o) | Subject | [inline, virtual] |
EntropyShift(double T) | NetworkMinimizable | [virtual] |
F(double *parameters, double T)=0 | NetworkMinimizable | [pure virtual] |
F0(double *parameters, double T)=0 | NetworkMinimizable | [pure virtual] |
GetConversionFactor(int factorIndex) | NetworkMinimizable | [inline] |
GetEnergyLastComputed() | Minimizable | [inline, virtual] |
GetEntropyLastComputed() | Minimizable | [inline, virtual] |
GetExperiment() | NetworkMinimizable | [virtual] |
GetExperiment(int expNum) | NetworkMinimizable | [virtual] |
GetInitialChemConcOptimizable() const | NetworkMinimizable | [inline] |
GetInitialChemConcWeight() | NetworkMinimizable | [inline] |
GetLogsInObjectiveFunction() const | NetworkMinimizable | [inline] |
GetNBFactors() | NetworkMinimizable | [inline] |
GetNCells() | NetworkMinimizable | [inline] |
GetNParameters()=0 | NetworkMinimizable | [pure virtual] |
GetNResiduals() | NLLSMinimizable | [inline] |
GetParameter(int parIndex)=0 | NetworkMinimizable | [pure virtual] |
GetRateConstantsOptimizable() const | NetworkMinimizable | [inline] |
GetRateConstantsWeight() | NetworkMinimizable | [inline] |
GetResiduals() | NLLSMinimizable | [inline] |
GetTimeSeriesWeight() | NetworkMinimizable | [inline] |
Gradient(double *parameters) | Minimizable | [inline, virtual] |
Hessian(double *parameters) | Minimizable | [inline, virtual] |
initialChemConcOptimizable | NetworkMinimizable | [protected] |
initialChemConcWeight | NetworkMinimizable | [protected] |
Initialize(std::vector< Experiment * > experiments, std::vector< CReactionMover * > reactionMovers, int nCells, bool rateConstantsOptimizable, bool initialChemConcOptimizable, bool logsInObjectiveFunction, double timeSeriesWeight, double rateConstantsWeight, double initialChemConcWeight) | NetworkMinimizable | [virtual] |
Initialize(Experiment *experiment, CReactionMover *reactionMover, int nCells, bool rateConstantsOptimizable, bool initialChemConcOptimizable, bool logsInObjectiveFunction, double timeSeriesWeight, double rateConstantsWeight, double initialChemConcWeight) | NetworkMinimizable | [virtual] |
logsInObjectiveFunction | NetworkMinimizable | [protected] |
m_dEnergyLastComputed | Minimizable | [protected] |
m_dEntropyLastComputed | Minimizable | [protected] |
m_iNBFactors | NetworkMinimizable | [protected] |
m_pConversionFactors | NetworkMinimizable | [protected] |
nCells | NetworkMinimizable | [protected] |
NetworkMinimizable() | NetworkMinimizable | |
NLLSMinimizable() | NLLSMinimizable | |
Notify() | Subject | [inline, virtual] |
nResiduals | NLLSMinimizable | [protected] |
ObjectiveFunction(double *parameters) | NLLSMinimizable | [virtual] |
rateConstantsOptimizable | NetworkMinimizable | [protected] |
rateConstantsWeight | NetworkMinimizable | [protected] |
residuals | NLLSMinimizable | [protected] |
SetInitialChemConcWeight(double initialChemConcWeight) | NetworkMinimizable | [inline] |
SetNResiduals(int nResiduals) | NLLSMinimizable | [inline] |
SetRateConstantsWeight(double rateConstantsWeight) | NetworkMinimizable | [inline] |
SetTimeSeriesWeight(double timeSeriesWeight) | NetworkMinimizable | [inline] |
Subject() | Subject | [inline, protected] |
SumOfSquares() | NLLSMinimizable | |
timeSeriesWeight | NetworkMinimizable | [protected] |
~NetworkMinimizable() | NetworkMinimizable | [virtual] |
~NLLSMinimizable() | NLLSMinimizable | [virtual] |
~Subject() | Subject | [inline, virtual] |