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Experiment.cpp

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// Experiment.cpp: implementation of the Experiment class.
//

#include "Experiment.h"

// Construction/Destruction

Experiment::Experiment()
{

}

Experiment::Experiment(ReactionNetwork *reactionNetwork, std::string experimentName)
{
        _reactionNetwork = reactionNetwork;
        _experimentName = experimentName;

        _data = new ChemicalTimeSeriesData(_reactionNetwork);
        _forcingData = new CForcingData();
}

Experiment::~Experiment()
{
        if(_data != 0) delete [] _data;
        if(_forcingData != 0) delete _forcingData;
}

void Experiment::AddDataFileToList(std::string fileName)
{
        _fileList.push_back(fileName);
        cout << "File '" << fileName.c_str() << "' added to experiment " << _experimentName.c_str() << endl;
}

void Experiment::AddForcingFileToList(std::string fileName)
{
        _forcingFileList.push_back(fileName);
        cout << "File '" << fileName.c_str() << "' added to forcing list of experiment " << _experimentName.c_str() << endl;
}

void Experiment::ReadData()
{
        // read in the experimental data
        // does not check for multiple reads, which should be done either
        // here or in the AttachNewTimeSeries() function - the only guard
        // against this now is popping the files off the list as they are 
        // read so they have to be explicitly re-added.  Something safer 
        // would be better.  (KSB, 10/12/00)
        for(int i = 0; i < _fileList.size(); i++)
        {
                _data->AttachNewTimeSeries(_reactionNetwork,_fileList[i]);
                cout << "Data read from file '" << _fileList[i].c_str() << "'" << endl;
        }
        _fileList.erase(_fileList.begin(),_fileList.end());
}

void Experiment::ReadForcingData()
{
        // read in the forcing data
        // comments are ditto as in ReadData();
        for(int i = 0; i < _forcingFileList.size(); i++)
        {
                _forcingData->AttachNewForcingData(_reactionNetwork,_forcingFileList[i]);
                cout << "Forcing data read from file '" << _forcingFileList[i].c_str() << "'" << endl;
        }
        _forcingFileList.erase(_forcingFileList.begin(),_forcingFileList.end());
}

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