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Experiment Class Reference

#include <Experiment.h>

Collaboration diagram for Experiment:

[legend]List of all members.

Public Methods
	Experiment ()
	Experiment (ReactionNetwork *reactionNetwork, std::string experimentName="")
virtual	~Experiment ()
void	AddDataFileToList (std::string fileName)
void	AddForcingFileToList (std::string fileName)
void	ReadData ()
void	ReadForcingData ()
std::string	GetExperimentName () const
ReactionNetwork *	GetReactionNetwork ()
ChemicalTimeSeriesData *	GetChemicalTimeSeriesData ()
CForcingData *	GetForcingData ()
Private Attributes
std::string	_experimentName
std::vector< std::string >	_fileList
std::vector< std::string >	_forcingFileList
ReactionNetwork *	_reactionNetwork
ChemicalTimeSeriesData *	_data
CForcingData *	_forcingData

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Constructor & Destructor Documentation

Experiment::Experiment (    )

Definition at line 11 of file Experiment.cpp.

Experiment::Experiment (  ReactionNetwork *    reactionNetwork, std::string    experimentName = "" )

Definition at line 16 of file Experiment.cpp. References _data, _experimentName, _forcingData, and _reactionNetwork.

Experiment::~Experiment (    )  [virtual]

Definition at line 25 of file Experiment.cpp. References _data, and _forcingData.

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Member Function Documentation

void Experiment::AddDataFileToList (  std::string    fileName )

Definition at line 31 of file Experiment.cpp. References _experimentName, and _fileList.

void Experiment::AddForcingFileToList (  std::string    fileName )

Definition at line 37 of file Experiment.cpp. References _experimentName, and _forcingFileList.

ChemicalTimeSeriesData* Experiment::GetChemicalTimeSeriesData (    )  [inline]

Definition at line 34 of file Experiment.h. References _data. Referenced by SingleNetworkMinimizable::ComputeResiduals, SingleNetworkMinimizable::Initialize, GnuPlotterTimeSeriesSharedBFactorObserver::Update, GnuPlotterTimeSeriesObserver::Update, and GnuPlotterEnsembleDataDirectorObserver::Update.

std::string Experiment::GetExperimentName (    )  const [inline]

Definition at line 32 of file Experiment.h. References _experimentName.

CForcingData* Experiment::GetForcingData (    )  [inline]

Definition at line 35 of file Experiment.h. References _forcingData. Referenced by SingleNetworkMinimizable::ComputeResiduals.

ReactionNetwork* Experiment::GetReactionNetwork (    )  [inline]

Definition at line 33 of file Experiment.h. References _reactionNetwork. Referenced by SingleNetworkMinimizable::ComputeResiduals, SingleNetworkMinimizable::GetNParameters, SingleNetworkMinimizable::Initialize, GnuPlotterTrajectoryObserver::Update, GnuPlotterTimeSeriesSharedBFactorObserver::Update, GnuPlotterTimeSeriesObserver::Update, and GnuPlotterEnsembleDataDirectorObserver::Update.

void Experiment::ReadData (    )

Definition at line 43 of file Experiment.cpp. References _data, _fileList, _reactionNetwork, and ChemicalTimeSeriesData::AttachNewTimeSeries. Referenced by SingleNetworkMinimizable::Initialize.

void Experiment::ReadForcingData (    )

Definition at line 59 of file Experiment.cpp. References _forcingData, _forcingFileList, _reactionNetwork, and CForcingData::AttachNewForcingData. Referenced by SingleNetworkMinimizable::Initialize.

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Member Data Documentation

ChemicalTimeSeriesData* Experiment::_data [private]

Definition at line 41 of file Experiment.h. Referenced by Experiment, GetChemicalTimeSeriesData, ReadData, and ~Experiment.

std::string Experiment::_experimentName [private]

Definition at line 37 of file Experiment.h. Referenced by AddDataFileToList, AddForcingFileToList, Experiment, and GetExperimentName.

std::vector<std::string> Experiment::_fileList [private]

Definition at line 38 of file Experiment.h. Referenced by AddDataFileToList, and ReadData.

CForcingData* Experiment::_forcingData [private]

Definition at line 42 of file Experiment.h. Referenced by Experiment, GetForcingData, ReadForcingData, and ~Experiment.

std::vector<std::string> Experiment::_forcingFileList [private]

Definition at line 39 of file Experiment.h. Referenced by AddForcingFileToList, and ReadForcingData.

ReactionNetwork* Experiment::_reactionNetwork [private]

Definition at line 40 of file Experiment.h. Referenced by Experiment, GetReactionNetwork, ReadData, and ReadForcingData.

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The documentation for this class was generated from the following files:

• Experiment.h
• Experiment.cpp

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