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GeneticCode Class Reference

#include <GeneticCode.h>

List of all members.

Public Methods

 ~GeneticCode ()
 GeneticCode ()
Anticodon get_anticodon (Codon)
Codon read_seq (char *)
void write_seq (Codon, char *)
const int GetNumCodons ()
const int GetNumAnticodons ()

Static Protected Attributes

const int NUM_CODONS = 64
const int NUM_ANTICODONS = 33

Private Attributes

int * code

Constructor & Destructor Documentation

GeneticCode::~GeneticCode (    ) 
 

Definition at line 10 of file GeneticCode.cpp.

References code.

GeneticCode::GeneticCode (    ) 
 

Definition at line 16 of file GeneticCode.cpp.

References aaa, AAA, AAC, AAG, AAU, ACA, ACC, ACG, ACU, AGA, AGC, AGG, AGU, AUA, AUC, AUG, AUU, CAA, CAC, CAG, cag, CAU, cau, CCA, cca, CCC, ccc, CCG, ccg, CCU, CGA, CGC, CGG, CGU, code, CUA, CUC, cug, CUG, CUU, GAA, gaa, gac, GAC, GAG, gag, GAU, gau, GCA, gca, GCC, gcc, GCG, GCU, gcu, GGA, gga, ggc, GGC, GGG, GGU, ggu, GUA, GUC, GUG, GUU, icg, nau, NUM_CODONS, qgg, qua, quc, qug, quu, stop, UAA, UAC, UAG, uag, UAU, UCA, ucc, UCC, UCG, UCU, ucu, UGA, UGC, ugg, UGG, UGU, ugu, UUA, uuc, UUC, uug, UUG, UUU, and uuu.

Member Function Documentation

Anticodon GeneticCode::get_anticodon (  Codon    ) 
 

Definition at line 87 of file GeneticCode.cpp.

References Anticodon, code, and Codon.

Referenced by TranslationModelMinimizable::ComputeResiduals, and TranslationModelMinimizable::TranslationModelMinimizable.

const int GeneticCode::GetNumAnticodons (    )  [inline]
 

Definition at line 42 of file GeneticCode.h.

References NUM_ANTICODONS.

Referenced by TranslationModelMinimizable::ComputeResiduals, and TranslationModelMinimizable::TranslationModelMinimizable.

const int GeneticCode::GetNumCodons (    )  [inline]
 

Definition at line 41 of file GeneticCode.h.

References NUM_CODONS.

Referenced by TranslationModelMinimizable::TranslationModelMinimizable.

Codon GeneticCode::read_seq (  char *    ) 
 

Definition at line 92 of file GeneticCode.cpp.

References AAA, AAC, AAG, AAU, ACA, ACC, ACG, ACU, AGA, AGC, AGG, AGU, AUA, AUC, AUG, AUU, CAA, CAC, CAG, CAU, CCA, CCC, CCG, CCU, CGA, CGC, CGG, CGU, Codon, CUA, CUC, CUG, CUU, GAA, GAC, GAG, GAU, GCA, GCC, GCG, GCU, GGA, GGC, GGG, GGU, GUA, GUC, GUG, GUU, UAA, UAC, UAG, UAU, UCA, UCC, UCG, UCU, UGA, UGC, UGG, UGU, UUA, UUC, UUG, and UUU.

Referenced by TranslationModelMinimizable::TranslationModelMinimizable.

void GeneticCode::write_seq (  Codon   ,
char *   
) 
 

Definition at line 229 of file GeneticCode.cpp.

References AAA, AAC, AAG, AAU, ACA, ACC, ACG, ACU, AGA, AGC, AGG, AGU, AUA, AUC, AUG, AUU, CAA, CAC, CAG, CAU, CCA, CCC, CCG, CCU, CGA, CGC, CGG, CGU, Codon, CUA, CUC, CUG, CUU, GAA, GAC, GAG, GAU, GCA, GCC, GCG, GCU, GGA, GGC, GGG, GGU, GUA, GUC, GUG, GUU, UAA, UAC, UAG, UAU, UCA, UCC, UCG, UCU, UGA, UGC, UGG, UGU, UUA, UUC, UUG, and UUU.

Member Data Documentation

int* GeneticCode::code [private]
 

Definition at line 47 of file GeneticCode.h.

Referenced by GeneticCode, get_anticodon, and ~GeneticCode.

const int GeneticCode::NUM_ANTICODONS = 33 [static, protected]
 

Definition at line 5 of file GeneticCode.cpp.

Referenced by GetNumAnticodons.

const int GeneticCode::NUM_CODONS = 64 [static, protected]
 

Definition at line 7 of file GeneticCode.cpp.

Referenced by GeneticCode, and GetNumCodons.

The documentation for this class was generated from the following files:
Generated on Mon Nov 3 10:06:18 2003 by doxygen1.2.14 written by Dimitri van Heesch, © 1997-2002