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CReactionMover Class Reference

#include <ReactionMover.h>

Inheritance diagram for CReactionMover:

[legend]Collaboration diagram for CReactionMover:

[legend]List of all members.

Public Methods
	CReactionMover ()
	CReactionMover (int seed, double frequency)
virtual	~CReactionMover ()
virtual void	Move (double xInitial, double xFinal, ReactionNetwork *pReactionNetwork)=0
int	GetTimeCount () const
int	GetSeed () const
ReactionNetwork *	GetReactionNetwork ()
bool	MoveTimeIsZero (double deltaTime)
virtual void	SetMinStepSize (double size)
virtual double	GetMinStepSize () const
virtual void	SetMaxStepSize (double size)
virtual double	GetMaxStepSize () const
virtual void	IncrementTotalSteps ()
virtual int	GetTotalStepsTaken () const
virtual void	ResetStepStatistics (double interval)
Protected Attributes
double	m_dTime
int	m_iCount
int	m_iSeed
double	m_dFrequency
ReactionNetwork *	m_pReactionNetwork
double	m_dMinStepSize
double	m_dMaxStepSize
int	m_iTotalStepsTaken

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Constructor & Destructor Documentation

CReactionMover::CReactionMover (    )

Definition at line 18 of file ReactionMover.cpp.

CReactionMover::CReactionMover (  int    seed, double    frequency )

Definition at line 24 of file ReactionMover.cpp. References m_dFrequency, and m_iSeed.

CReactionMover::~CReactionMover (    )  [virtual]

Definition at line 30 of file ReactionMover.cpp.

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Member Function Documentation

virtual double CReactionMover::GetMaxStepSize (    )  const [inline, virtual]

Definition at line 29 of file ReactionMover.h. References m_dMaxStepSize. Referenced by CSynchronizedRungeKuttaMover::Move, CSynchronizedCashKarpMover::Move, CStiffBulirschStoerMover::Move, CQualityControlRK2TMover::Move, and CQualityControlCashKarpMover::Move.

virtual double CReactionMover::GetMinStepSize (    )  const [inline, virtual]

Definition at line 27 of file ReactionMover.h. References m_dMinStepSize. Referenced by CSynchronizedRungeKuttaMover::Move, CSynchronizedCashKarpMover::Move, CStiffBulirschStoerMover::Move, CQualityControlRK2TMover::Move, and CQualityControlCashKarpMover::Move.

ReactionNetwork* CReactionMover::GetReactionNetwork (    )  [inline]

Definition at line 24 of file ReactionMover.h. References m_pReactionNetwork. Referenced by ConcentrationObserver::Update, and CellAverageObserver::Update.

int CReactionMover::GetSeed (    )  const [inline]

Definition at line 23 of file ReactionMover.h. References m_iSeed.

int CReactionMover::GetTimeCount (    )  const [inline]

Definition at line 22 of file ReactionMover.h. References m_iCount. Referenced by ConcentrationObserver::Update, and CellAverageObserver::Update.

virtual int CReactionMover::GetTotalStepsTaken (    )  const [inline, virtual]

Definition at line 31 of file ReactionMover.h. References m_iTotalStepsTaken.

virtual void CReactionMover::IncrementTotalSteps (    )  [inline, virtual]

Definition at line 30 of file ReactionMover.h. References m_iTotalStepsTaken. Referenced by CSynchronizedRungeKuttaMover::Move, CSynchronizedCashKarpMover::Move, CStiffBulirschStoerMover::Move, CQualityControlRK2TMover::Move, and CQualityControlCashKarpMover::Move.

virtual void CReactionMover::Move (  double    xInitial, double    xFinal, ReactionNetwork *    pReactionNetwork )  [pure virtual]

Implemented in CContinuousTimeMonteCarloMover. Referenced by SingleNetworkMinimizable::ComputeResiduals, and CRunnable::Run.

bool CReactionMover::MoveTimeIsZero (  double    deltaTime )

Definition at line 35 of file ReactionMover.cpp. Referenced by CSynchronizedRungeKuttaMover::Move, CSynchronizedCashKarpMover::Move, CStiffBulirschStoerMover::Move, CRungeKuttaMover::Move, CRK4Mover::Move, CRK2ExplicitEulerHybridMover::Move, CQualityControlRungeKuttaMover::Move, CQualityControlRK2TMover::Move, CQualityControlCashKarpMover::Move, and CContinuousTimeMonteCarloMover::Move.

void CReactionMover::ResetStepStatistics (  double    interval )  [virtual]

Definition at line 47 of file ReactionMover.cpp. References m_iTotalStepsTaken, SetMaxStepSize, and SetMinStepSize. Referenced by SingleNetworkMinimizable::ComputeResiduals.

virtual void CReactionMover::SetMaxStepSize (  double    size )  [inline, virtual]

Definition at line 28 of file ReactionMover.h. References m_dMaxStepSize. Referenced by CSynchronizedRungeKuttaMover::Move, CSynchronizedCashKarpMover::Move, CStiffBulirschStoerMover::Move, CQualityControlRK2TMover::Move, CQualityControlCashKarpMover::Move, and ResetStepStatistics.

virtual void CReactionMover::SetMinStepSize (  double    size )  [inline, virtual]

Definition at line 26 of file ReactionMover.h. References m_dMinStepSize. Referenced by CSynchronizedRungeKuttaMover::Move, CSynchronizedCashKarpMover::Move, CStiffBulirschStoerMover::Move, CQualityControlRK2TMover::Move, CQualityControlCashKarpMover::Move, and ResetStepStatistics.

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Member Data Documentation

double CReactionMover::m_dFrequency [protected]

Definition at line 37 of file ReactionMover.h. Referenced by CReactionMover.

double CReactionMover::m_dMaxStepSize [protected]

Definition at line 42 of file ReactionMover.h. Referenced by GetMaxStepSize, and SetMaxStepSize.

double CReactionMover::m_dMinStepSize [protected]

Definition at line 40 of file ReactionMover.h. Referenced by GetMinStepSize, and SetMinStepSize.

double CReactionMover::m_dTime [protected]

Definition at line 34 of file ReactionMover.h. Referenced by CSynchronizedRungeKuttaMover::Move, CSynchronizedCashKarpMover::Move, CStiffBulirschStoerMover::Move, CRungeKuttaMover::Move, CRK4Mover::Move, CRK2ExplicitEulerHybridMover::Move, CQualityControlRungeKuttaMover::Move, CQualityControlRK2TMover::Move, CQualityControlCashKarpMover::Move, CMixedReactionMover::Move, CContinuousTimeMonteCarloMover::Move, CStiffBulirschStoerMover::SemiImplicitMidpoint, CQualityControlRungeKuttaMover::Stepper, CQualityControlRK2TMover::Stepper, CQualityControlCashKarpMover::Stepper, and CStiffBulirschStoerMover::StiffBSStep.

int CReactionMover::m_iCount [protected]

Definition at line 35 of file ReactionMover.h. Referenced by GetTimeCount, CSynchronizedRungeKuttaMover::Move, CSynchronizedCashKarpMover::Move, CStiffBulirschStoerMover::Move, CRungeKuttaMover::Move, CRK4Mover::Move, CRK2ExplicitEulerHybridMover::Move, CQualityControlRungeKuttaMover::Move, CQualityControlRK2TMover::Move, CQualityControlCashKarpMover::Move, CMixedReactionMover::Move, and CContinuousTimeMonteCarloMover::Move.

int CReactionMover::m_iSeed [protected]

Definition at line 36 of file ReactionMover.h. Referenced by CReactionMover, and GetSeed.

int CReactionMover::m_iTotalStepsTaken [protected]

Definition at line 44 of file ReactionMover.h. Referenced by GetTotalStepsTaken, IncrementTotalSteps, CSynchronizedRungeKuttaMover::Move, CSynchronizedCashKarpMover::Move, CQualityControlRK2TMover::Move, and ResetStepStatistics.

ReactionNetwork* CReactionMover::m_pReactionNetwork [protected]

Definition at line 38 of file ReactionMover.h. Referenced by CContinuousTimeMonteCarloMover::ChooseMove, CDifferentialEquationMover::ComputeDerivatives, CDifferentialEquationMover::ComputeJacobian, CContinuousTimeMonteCarloMover::DoMove, GetReactionNetwork, CSynchronizedRungeKuttaMover::Move, CSynchronizedCashKarpMover::Move, CStiffBulirschStoerMover::Move, CRungeKuttaMover::Move, CRK4Mover::Move, CRK2ExplicitEulerHybridMover::Move, CQualityControlRungeKuttaMover::Move, CQualityControlRK2TMover::Move, CQualityControlCashKarpMover::Move, CMixedReactionMover::Move, and CContinuousTimeMonteCarloMover::Move.

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The documentation for this class was generated from the following files:

• ReactionMover.h
• ReactionMover.cpp

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