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CEnsembleCombinationDirector Class Reference

#include <EnsembleCombinationDirector.h>

Inheritance diagram for CEnsembleCombinationDirector:

[legend]Collaboration diagram for CEnsembleCombinationDirector:

[legend]List of all members.

Public Methods
	CEnsembleCombinationDirector (int ensembleSize)
virtual	~CEnsembleCombinationDirector ()
void	LoadEnsembleInfo (std::string parameterFile)
void	SumAllocate ()
void	Execute ()
void	ConvertToStatistics ()
const double **	GetNoDataAverages (int index) const
const double **	GetNoDataStdDevs (int index) const
const double **	GetDataAverages (int index) const
const double **	GetDataStdDevs (int index) const
virtual CReactionMover *	GetMover (int moverIndex)
virtual int	GetNExperiments () const
virtual SingleNetworkMinimizable *	GetMinimizable (int minIndex)
Protected Attributes
int	m_iEnsembleSize
std::vector< double * >	m_vpdEnsembleParameters
std::vector< double ** >	m_vpdNoDataSumC
std::vector< double ** >	m_vpdNoDataSumCSqr
std::vector< double ** >	m_vpdDataSumC
std::vector< double ** >	m_vpdDataSumCSqr
std::vector< GnuPlotterEnsembleRunDirectorObserver * >	m_vpEnsembleRunPlotters
std::vector< GnuPlotterEnsembleDataDirectorObserver * >	m_vpEnsembleDataPlotters
std::vector< SingleNetworkMinimizable * >	m_vpMinimizables
std::vector< Experiment * >	m_vpExperiments
std::vector< ReactionNetwork * >	m_vpNetworks
std::vector< CReactionMover * >	m_vpMovers
Private Methods
virtual void	DefineExperiments ()=0
virtual void	DefineRuns ()=0

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Constructor & Destructor Documentation

CEnsembleCombinationDirector::CEnsembleCombinationDirector (  int    ensembleSize )

Definition at line 11 of file EnsembleCombinationDirector.cpp. References m_iEnsembleSize.

CEnsembleCombinationDirector::~CEnsembleCombinationDirector (    )  [virtual]

Definition at line 16 of file EnsembleCombinationDirector.cpp. References m_vpdDataSumC, m_vpdDataSumCSqr, m_vpdEnsembleParameters, m_vpdNoDataSumC, m_vpdNoDataSumCSqr, m_vpEnsembleDataPlotters, m_vpEnsembleRunPlotters, m_vpExperiments, m_vpMinimizables, m_vpMovers, and m_vpNetworks.

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Member Function Documentation

void CEnsembleCombinationDirector::ConvertToStatistics (    )

Definition at line 298 of file EnsembleCombinationDirector.cpp. References m_iEnsembleSize, m_vpdDataSumC, m_vpdDataSumCSqr, m_vpdNoDataSumC, m_vpdNoDataSumCSqr, m_vpMinimizables, and CRunDirector::m_vpRunnables. Referenced by Execute.

virtual void CEnsembleCombinationDirector::DefineExperiments (    )  [private, pure virtual]

Implemented in CLaubLoomisDictyNetworkEnsembleDirector.

virtual void CEnsembleCombinationDirector::DefineRuns (    )  [private, pure virtual]

Implements CRunDirector. Implemented in CLaubLoomisDictyNetworkEnsembleDirector.

void CEnsembleCombinationDirector::Execute (    )  [virtual]

Reimplemented from CRunDirector. Definition at line 147 of file EnsembleCombinationDirector.cpp. References ConvertToStatistics, m_iEnsembleSize, m_vpdDataSumC, m_vpdDataSumCSqr, m_vpdEnsembleParameters, m_vpdNoDataSumC, m_vpdNoDataSumCSqr, m_vpMinimizables, CRunDirector::m_vpRunnables, and Subject::Notify.

const double** CEnsembleCombinationDirector::GetDataAverages (  int    index )  const [inline]

Definition at line 36 of file EnsembleCombinationDirector.h. References m_vpdDataSumC. Referenced by GnuPlotterEnsembleDataDirectorObserver::Update.

const double** CEnsembleCombinationDirector::GetDataStdDevs (  int    index )  const [inline]

Definition at line 37 of file EnsembleCombinationDirector.h. References m_vpdDataSumCSqr. Referenced by GnuPlotterEnsembleDataDirectorObserver::Update.

virtual SingleNetworkMinimizable* CEnsembleCombinationDirector::GetMinimizable (  int    minIndex )  [inline, virtual]

Definition at line 42 of file EnsembleCombinationDirector.h. References m_vpMinimizables. Referenced by GnuPlotterEnsembleDataDirectorObserver::Update.

virtual CReactionMover* CEnsembleCombinationDirector::GetMover (  int    moverIndex )  [inline, virtual]

Definition at line 39 of file EnsembleCombinationDirector.h. References m_vpMovers.

virtual int CEnsembleCombinationDirector::GetNExperiments (    )  const [inline, virtual]

Definition at line 41 of file EnsembleCombinationDirector.h. References m_vpExperiments.

const double** CEnsembleCombinationDirector::GetNoDataAverages (  int    index )  const [inline]

Definition at line 34 of file EnsembleCombinationDirector.h. References m_vpdNoDataSumC. Referenced by GnuPlotterEnsembleRunDirectorObserver::Update.

const double** CEnsembleCombinationDirector::GetNoDataStdDevs (  int    index )  const [inline]

Definition at line 35 of file EnsembleCombinationDirector.h. References m_vpdNoDataSumCSqr. Referenced by GnuPlotterEnsembleRunDirectorObserver::Update.

void CEnsembleCombinationDirector::LoadEnsembleInfo (  std::string    parameterFile )

Definition at line 118 of file EnsembleCombinationDirector.cpp. References m_iEnsembleSize, m_vpdEnsembleParameters, m_vpMinimizables, CRunDirector::m_vpRunnables, and ParameterReader::ReadParameter. Referenced by CEGFRTraffickingEnsembleDirector::CEGFRTraffickingEnsembleDirector, CLaubLoomisDictyNetworkEnsembleDirector::CLaubLoomisDictyNetworkEnsembleDirector, COneGeneEnsembleDirector::COneGeneEnsembleDirector, CPC12AlternateEnsembleDirector::CPC12AlternateEnsembleDirector, CPC12EGFNGFEnsembleDirector::CPC12EGFNGFEnsembleDirector, CPC12RapMinusEnsembleDirector::CPC12RapMinusEnsembleDirector, and CQuorumSensingEnsembleDirector::CQuorumSensingEnsembleDirector.

void CEnsembleCombinationDirector::SumAllocate (    )

Definition at line 65 of file EnsembleCombinationDirector.cpp. References m_vpdDataSumC, m_vpdDataSumCSqr, m_vpdNoDataSumC, m_vpdNoDataSumCSqr, m_vpMinimizables, and CRunDirector::m_vpRunnables. Referenced by CEGFRTraffickingEnsembleDirector::CEGFRTraffickingEnsembleDirector, CLaubLoomisDictyNetworkEnsembleDirector::CLaubLoomisDictyNetworkEnsembleDirector, COneGeneEnsembleDirector::COneGeneEnsembleDirector, CPC12AlternateEnsembleDirector::CPC12AlternateEnsembleDirector, CPC12EGFNGFEnsembleDirector::CPC12EGFNGFEnsembleDirector, CPC12RapMinusEnsembleDirector::CPC12RapMinusEnsembleDirector, and CQuorumSensingEnsembleDirector::CQuorumSensingEnsembleDirector.

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Member Data Documentation

int CEnsembleCombinationDirector::m_iEnsembleSize [protected]

Definition at line 49 of file EnsembleCombinationDirector.h. Referenced by CEnsembleCombinationDirector, ConvertToStatistics, Execute, and LoadEnsembleInfo.

std::vector<double **> CEnsembleCombinationDirector::m_vpdDataSumC [protected]

Definition at line 55 of file EnsembleCombinationDirector.h. Referenced by ConvertToStatistics, Execute, GetDataAverages, SumAllocate, and ~CEnsembleCombinationDirector.

std::vector<double **> CEnsembleCombinationDirector::m_vpdDataSumCSqr [protected]

Definition at line 56 of file EnsembleCombinationDirector.h. Referenced by ConvertToStatistics, Execute, GetDataStdDevs, SumAllocate, and ~CEnsembleCombinationDirector.

std::vector<double *> CEnsembleCombinationDirector::m_vpdEnsembleParameters [protected]

Definition at line 50 of file EnsembleCombinationDirector.h. Referenced by Execute, LoadEnsembleInfo, and ~CEnsembleCombinationDirector.

std::vector<double **> CEnsembleCombinationDirector::m_vpdNoDataSumC [protected]

Definition at line 52 of file EnsembleCombinationDirector.h. Referenced by ConvertToStatistics, Execute, GetNoDataAverages, SumAllocate, and ~CEnsembleCombinationDirector.

std::vector<double **> CEnsembleCombinationDirector::m_vpdNoDataSumCSqr [protected]

Definition at line 53 of file EnsembleCombinationDirector.h. Referenced by ConvertToStatistics, Execute, GetNoDataStdDevs, SumAllocate, and ~CEnsembleCombinationDirector.

std::vector<GnuPlotterEnsembleDataDirectorObserver *> CEnsembleCombinationDirector::m_vpEnsembleDataPlotters [protected]

Definition at line 58 of file EnsembleCombinationDirector.h. Referenced by CEGFRTraffickingEnsembleDirector::CEGFRTraffickingEnsembleDirector, CLaubLoomisDictyNetworkEnsembleDirector::CLaubLoomisDictyNetworkEnsembleDirector, COneGeneEnsembleDirector::COneGeneEnsembleDirector, CQuorumSensingEnsembleDirector::CQuorumSensingEnsembleDirector, CEGFRTraffickingEnsembleDirector::~CEGFRTraffickingEnsembleDirector, ~CEnsembleCombinationDirector, CLaubLoomisDictyNetworkEnsembleDirector::~CLaubLoomisDictyNetworkEnsembleDirector, COneGeneEnsembleDirector::~COneGeneEnsembleDirector, CPC12AlternateEnsembleDirector::~CPC12AlternateEnsembleDirector, CPC12EGFNGFEnsembleDirector::~CPC12EGFNGFEnsembleDirector, CPC12RapMinusEnsembleDirector::~CPC12RapMinusEnsembleDirector, and CQuorumSensingEnsembleDirector::~CQuorumSensingEnsembleDirector.

std::vector<GnuPlotterEnsembleRunDirectorObserver *> CEnsembleCombinationDirector::m_vpEnsembleRunPlotters [protected]

Definition at line 57 of file EnsembleCombinationDirector.h. Referenced by CEGFRTraffickingEnsembleDirector::CEGFRTraffickingEnsembleDirector, CQuorumSensingEnsembleDirector::CQuorumSensingEnsembleDirector, CEGFRTraffickingEnsembleDirector::~CEGFRTraffickingEnsembleDirector, ~CEnsembleCombinationDirector, CLaubLoomisDictyNetworkEnsembleDirector::~CLaubLoomisDictyNetworkEnsembleDirector, COneGeneEnsembleDirector::~COneGeneEnsembleDirector, CPC12AlternateEnsembleDirector::~CPC12AlternateEnsembleDirector, CPC12EGFNGFEnsembleDirector::~CPC12EGFNGFEnsembleDirector, and CPC12RapMinusEnsembleDirector::~CPC12RapMinusEnsembleDirector.

std::vector<Experiment *> CEnsembleCombinationDirector::m_vpExperiments [protected]

Definition at line 61 of file EnsembleCombinationDirector.h. Referenced by CEGFRTraffickingEnsembleDirector::CEGFRTraffickingEnsembleDirector, CLaubLoomisDictyNetworkEnsembleDirector::CLaubLoomisDictyNetworkEnsembleDirector, COneGeneEnsembleDirector::COneGeneEnsembleDirector, CPC12AlternateEnsembleDirector::CPC12AlternateEnsembleDirector, CPC12EGFNGFEnsembleDirector::CPC12EGFNGFEnsembleDirector, CPC12RapMinusEnsembleDirector::CPC12RapMinusEnsembleDirector, CQuorumSensingEnsembleDirector::CQuorumSensingEnsembleDirector, GetNExperiments, and ~CEnsembleCombinationDirector.

std::vector<SingleNetworkMinimizable *> CEnsembleCombinationDirector::m_vpMinimizables [protected]

Definition at line 60 of file EnsembleCombinationDirector.h. Referenced by CEGFRTraffickingEnsembleDirector::CEGFRTraffickingEnsembleDirector, CLaubLoomisDictyNetworkEnsembleDirector::CLaubLoomisDictyNetworkEnsembleDirector, COneGeneEnsembleDirector::COneGeneEnsembleDirector, ConvertToStatistics, CPC12AlternateEnsembleDirector::CPC12AlternateEnsembleDirector, CPC12EGFNGFEnsembleDirector::CPC12EGFNGFEnsembleDirector, CPC12RapMinusEnsembleDirector::CPC12RapMinusEnsembleDirector, CQuorumSensingEnsembleDirector::CQuorumSensingEnsembleDirector, CQuorumSensingEnsembleDirector::DefineExperiments, CPC12RapMinusEnsembleDirector::DefineExperiments, CPC12EGFNGFEnsembleDirector::DefineExperiments, CPC12AlternateEnsembleDirector::DefineExperiments, COneGeneEnsembleDirector::DefineExperiments, CEGFRTraffickingEnsembleDirector::DefineExperiments, Execute, GetMinimizable, LoadEnsembleInfo, SumAllocate, ~CEnsembleCombinationDirector, and CQuorumSensingEnsembleDirector::~CQuorumSensingEnsembleDirector.

std::vector<CReactionMover *> CEnsembleCombinationDirector::m_vpMovers [protected]

Definition at line 63 of file EnsembleCombinationDirector.h. Referenced by CEGFRTraffickingEnsembleDirector::CEGFRTraffickingEnsembleDirector, CLaubLoomisDictyNetworkEnsembleDirector::CLaubLoomisDictyNetworkEnsembleDirector, COneGeneEnsembleDirector::COneGeneEnsembleDirector, CPC12AlternateEnsembleDirector::CPC12AlternateEnsembleDirector, CPC12EGFNGFEnsembleDirector::CPC12EGFNGFEnsembleDirector, CPC12RapMinusEnsembleDirector::CPC12RapMinusEnsembleDirector, CQuorumSensingEnsembleDirector::CQuorumSensingEnsembleDirector, GetMover, and ~CEnsembleCombinationDirector.

std::vector<ReactionNetwork *> CEnsembleCombinationDirector::m_vpNetworks [protected]

Definition at line 62 of file EnsembleCombinationDirector.h. Referenced by CEGFRTraffickingEnsembleDirector::CEGFRTraffickingEnsembleDirector, CLaubLoomisDictyNetworkEnsembleDirector::CLaubLoomisDictyNetworkEnsembleDirector, COneGeneEnsembleDirector::COneGeneEnsembleDirector, CPC12AlternateEnsembleDirector::CPC12AlternateEnsembleDirector, CPC12EGFNGFEnsembleDirector::CPC12EGFNGFEnsembleDirector, CPC12RapMinusEnsembleDirector::CPC12RapMinusEnsembleDirector, CQuorumSensingEnsembleDirector::CQuorumSensingEnsembleDirector, and ~CEnsembleCombinationDirector.

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The documentation for this class was generated from the following files:

• EnsembleCombinationDirector.h
• EnsembleCombinationDirector.cpp

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