James Sethna >
Sloppy
Models > Why is science possible?
Why is science possible?
Why is science possible? Why is the world comprehensible? How is it that
we can capture the behavior of a cell with thousands of different interacting
proteins, RNA, and DNA using models that ignore most of this complexity?
Why is it possible to make theories about ecosystems, or the US economy?
Our group has discovered a striking similarity between theories of physics
and more general models used to study complex systems such as in
systems biology, economics, ecology, climate science, etc.
Over the past decade, we have been studying a
wonderful commonality in these more general systems. Their collective
behavior depends
mostly on a few "stiff' combinations of rules; most other combinations
are
sloppy, with little or no influence on system behavior.
|
|
Sloppy models are multiparameter models, whose behavior
depends only on a few stiff combinations of parameters, with
many sloppy parameter directions largely unimportant for model
predictions. We've found them ubiquitous in
systems
biology and in other fields of science where models are fit to data.
|
We describe the possible system behaviors as points in a 'behavior' space,
and we find that they form a hyper-ribbon, long along
stiff combinations and very thin (reflecting unchanging behavior) when
sloppy combinations are changed (fig below right). Theories of
cell behavior (and presumably ecosystems and economics) don't need to
reflect all the details; a useful theory needs only to capture the
collective, 'stiff' behaviors.
|
|
Hyperribbon structure in behavior space, for the diffusion
equation after three evolution steps. Note that it is longer than it is wide,
and it is very thin -- like a ribbon.
|
Theoretical physics, in fact, works precisely for this same reason.
We don't need to know the shapes and sizes of individual molecules to
make a theory of sound waves; only the overall density and compressibility
(weight and squeezability) matter. High energy physicists don't need to solve
string theory to predict the Higgs boson, or to describe quarks.
Indeed, theoretical physics is like a tree (figures below). Our
high-energy colleagues study the limbs of the tree, searching for more
unified theories closer to the trunk. We in condensed matter physics build
outward, searching for 'emergent' branches and leaves -- effective theories
describing sound, semiconductors, and superfluids.
Does physics share the 'sloppy model' behavior we found in other sciences?
We generalized our information geometry methods and applied them to
two standard physics models -- diffusion and the Ising model (figure at left).
The diffusion equation describes how perfume goes from her skin
to your nose (if the air is still). It is usually derived as a continuum
limit, using methods similar to those we use for describing many other
phases and phenomena in condensed matter physics -- sound, magnets, and
superconductors. The Ising model of magnetism, which becomes fractal,
is usually analyzed using renormalization group
similar to methods used in high-energy physics. Our method, different
from continuum limits and renormalization group methods, examines
different combinations of the microscopic rules, finding the stiff and sloppy
directions. The figure at left shows that the diffusion equation and the
Ising model share the same spread of stiff and sloppy combinations as do
systems drawn from other branches of science. Moreover, the stiff directions
directly correspond to the important combinations that the traditional
continuum limit and renormalization-group methods identified as the
collective, emergent control parameters.
|
|
High Energy Physics. Theories in high-energy physics
form a nested hierarchy. Each theory is derived from a more fundamental,
unified theory, describing behavior at higher energy scales (demanding
bigger particle accellerators). The unified theory explains key
parameters in the derived theory: quantum chromodynamics and the
electroweak theory tell you the masses of the nuclei and electron.
|
|
|
Condensed-matter physics. Theories in condensed-matter
physics form a nested hierarchy. Each theory emerges from a more
microscopic and complicated theory 'below' it, providing a simpler and
more beautiful description. The emergent theory compresses the
microscopic details into a few governing parameters that efficiently
describe the behavior at longer distances, longer times, and lower
temperatures.
|
So, physics, systems biology, and presumably much of the rest of science all
rely on a kind of information compression about the system rules. The collective
system behavior in each case relies on only a few 'stiff' combinations of
parameters from the many variables in the full microscopic description.
In physics, we have systematic methods for extracting these emergent,
collective theories from the microscopic complexity. In other fields,
we don't have such tools -- but the theories show the same kind of
independence from the microscopic details.
If one needed to extract every detail of the true underlying theory to make
a useful theory, science would be impossible. Sloppiness makes science possible.
|
|
Sloppy Eigenvalues. We use our 'sloppy model' analysis
tools to study the hierarchy of models in theoretical physics. We find
exactly the same parameter compression behavior in physics as we found
in systems biology and other fields of science. Only a few 'stiff'
combinations of parameters determine the system behavior.
|
References and Videos
- Parameter Space Compression
Underlies Emergent Theories and Predictive Models,
Benjamin B. Machta, Ricky Chachra, Mark K. Transtrum, James P. Sethna,
Science 342, 604-607 (2013).
See also
Physicists unify the structure of scientific theories in the Cornell Chronicle
(Anne Ju).
-
Jesse Silverberg's
Huffington Post blog
and Kathryn McGill's vlog
Soft
Matters with Jim Sethna from
The Physics Factor.
-
(Unedited) Interview of Sethna
by Steven Reiner, Stony Brook School of Journalism, from a workshop
by the Alan Alda Center for Communicating Science sponsored by the Kavli
Institute at Cornell, May 2013.
Mobile version.
- News article on our paper showing physics is sloppy too
- The Secret Simplicity of Science, an AI video describing our work by From Coin Flips to Culture Wars by chargeDeficit.
- Other papers on sloppy models
More on sloppiness:
Short course on information geometry, sloppy models, and visualizing
behavior in high dimensions
Last Modified: October 23, 2013
James P. Sethna,
sethna@lassp.cornell.edu;
This work supported by the Division of Materials Research of
the U.S. National Science Foundation, through grant DMR-1005479.
Statistical Mechanics: Entropy, Order Parameters, and Complexity,
now available at
Oxford University Press
(USA,
Europe).